Yasin KAYMAZ
Mühendislik Fakültesi, Biyomühendislik Bölümü, Biyomühendislik Anabilim Dalı
Research areas: Bioinformatics, Biodiversity, Biological Information, Biological Modelling, Biological Databases, Evolution, Genomics, Molecular Biochemistry, Population Genetics, Cytogenetic
Publications
- Strict-core BUSCO supermatrix, partition scheme and maximum-likelihood trees for 363 public Fusarium oxysporum genomes (2026)
- Strict-core BUSCO supermatrix, partition scheme and maximum-likelihood trees for 363 public Fusarium oxysporum genomes (2026)
- BMGLab/TRclinsafe: TR-CLINSAFE v1.0.0 — code and data for the HISS submission (2026)
- BMGLab/TRclinsafe: TR-CLINSAFE v1.0.0 — code and data for the HISS submission (2026)
- Core-BUSCO supermatrix, partition file and maximum-likelihood trees for 150 Fol-cluster Fusarium oxysporum genomes plus 15 newly sequenced isolates (2026)
- Core-BUSCO supermatrix, partition file and maximum-likelihood trees for 150 Fol-cluster Fusarium oxysporum genomes plus 15 newly sequenced isolates (2026)
- Nuclear Morphology Tracks Molecular Class Unevenly Across Four Cancers (2026)
- Lineage predicts SIX effector repertoire but not Avr2 race genotype in Fusarium oxysporum isolates from Türkiye (2026)
- GSNetAct benchmark and analysis pipeline (2026)
- GSNetAct benchmark and analysis pipeline (2026)
- PeakATail (2026)
- PeakATail (2026)
- PeakATail (2026)
- Only a third of Fusarium oxysporum formae speciales are monophyletic: a per-label and per-deposit audit of 363 public genomes (2026)
- Transcriptional regulons of tumor-associated macrophages reveal divergent polarization states across cancer types (2026)
- COST action CA22103 Net4Brain: Pan-European network advancing translational research in brain cancer (2026)
- Genome-wide diversity and selection in Poaceae plastomes (2026)
- scRNA-seq-derived deconvolution and prognostic risk model for lung cancer (2026)
- The Impact of the Exposome on Epithelial Barriers: New Approach Methodologies for Translational Research (2026)
- Whole-genome assemblies and comparative genomics of Fusarium oxysporum f. sp. capsici (2026)
- Transcriptional states of lung cancer microenvironment reveal macrophage subtype dynamics linked to disease progression (2025)
- The impact of aspirin on PD-L1 expression and alteration of M2 polarization in non-small cell lung cancer (2025)
- The impact of aspirin on PD-L1 expression and alteration of M2 polarization in non-small cell lung cancer (2025)
- Transcriptional states of lung cancer microenvironment reveal macrophage subtype dynamics linked to disease progression (2025)
- Analysis of the ycf1 Gene within the Fabaceae (Leguminosae) Family (2025)
- Single-cell transcriptional profiling in Arabidopsis root exposed to boron toxicity at seedling stages (2025)
- Comprehensive Transcriptomic Investigation of Rett Syndrome Reveals Increasing Complexity Trends from Induced Pluripotent Stem Cells to Neurons with Implications for Enriched Pathways (2023)
- The complete sequence of Lens tomentosus chloroplast genome (2023)
- The complete chloroplast genome of <i>Cicer reticulatum</i> and comparative analysis against relative <i>Cicer</i> species (2023)
- Complete chloroplast genome of Lens lamottei reveals intraspecies variation among with Lens culinaris (2023)
- The complete chloroplast genome of Cicer reticulatum and comparative analysis against relative Cicer species (2023)
- Complete chloroplast genome sequence of Lens ervoides and comparison to Lens culinaris (2022)
- The complete chloroplast genome sequence of Cicer echinospermum, genome organization and comparison with related species (2022)
- The Complete Chloroplast Genome Sequence of Cicer bijugum, Genome Organization, and Comparison with Related Species (2022)
- The complete chloroplast genome sequence of Cicer echinospermum, genome organization and comparison with related species (2022)
- The complete chloroplast genome sequence of Cicer echinospermum, genome organization and comparison with related species (2022)
- Candidate antigen enrichment using scRNAseq data integration for CAR T cell therapy against non-small cell lung cancer (2021)
- HieRFIT: A hierarchical cell type classification tool for projections from complex single-cell atlas datasets. (2021)
- Evaluating Single-Cell Cluster Stability Using The Jaccard Similarity Index. (2020)
- Epstein-Barr Virus Genomes Reveal Population Structure and Type 1 Association with Endemic Burkitt Lymphoma (2020)
- A hierarchical random forest approach for cell type projections across single cell RNAseq datasets (2019)
- Single Cell Transcriptome Atlas of the Rat Brain (2019)
- scclusteval: An R package for evaluating single cell RNAseq clustering (2019)
- A hierarchical random forest approach for cell type projections across single cell RNAseq datasets (2019)
- Evolutionarily conserved pachytene piRNA loci are highly divergent among modern humans (2019)
- Whole genome sequencing of EBV from endemic Burkitt Lymphoma Tumors and Healthy Children reveals association with type 1 virus and specific gene variants (2018)
- High pathogen burden in childhood promotes the development of unconventional innate-like CD8(+) T cells (2017)
- FLT1 and transcriptome-wide polyadenylation site (PAS) analysis in preeclampsia (2017)
- Comprehensive Transcriptome and Mutational Profiling of Endemic Burkitt Lymphoma Reveals EBV Type-Specific Differences (2017)
- Human and Epstein-Barr Virus miRNA Profiling as Predictive Biomarkers for Endemic Burkitt Lymphoma (2017)
- Integrative microRNA and mRNA deep-sequencing expression profiling in endemic Burkitt lymphoma (2017)
- Gene Expression and Mutational Analysis of endemic Burkitt Lymphoma from Western Kenya (2016)
- Host and Viral MicroRNA Expression in eBL (2016)
- Understanding gene expression and alternative polyadenylation changes in preeclampsia (2015)
- TDP-43, a Key Amyotrophic Lateral Sclerosis (ALS) Protein, Regulates Alternative Polyadenylation (2015)
- Improved targeted deep-sequencing in malaria using molecular inversion probes (2014)
- Differential Gene Expression Analysis and Clinical Correlations within Endemic Burkitt Lymphoma (2014)
- Initial insights into the genetic variation of Babesia microti through whole-genome sequencing of patient infections (2014)
- Characterization of EBV genome sequences derived from tumors obtained from Kenyan children diagnosed with endemic Burkitt lymphoma (2014)
- Biodegradation kinetics of o-cresol by Pseudomonas putida DSM 548 (pJP4) and o-cresol removal in a batch-recirculation bioreactor system (2012)
- Differential gene expression analysis and correlation with Tumor Tropism in Endemic Burkitt Lymphoma (2012)
- Biodegradation kinetics of o-cresol by Pseudomonas putida DSM 548 (pJP4) and o-cresol removal in a batch-recirculation bioreactor system (2012)
- Biosorption kinetics of a direct azo dye Sirius Blue K-CFN by Trametes versicolor (2011)
- New and different lignocellulosic materials from Turkey for laccase and manganese peroxidase production by Trametes versicolor (2009)
- Sirius Blue K-CFN biodegradation by Trametes versicolor Biomass (2007)
- Biodegradation Kinetics of o- Cresol biodegradation by immobilized Pseudomonas putida (2007)
- Biodegradation Kinetics of o- Cresol biodegradation by immobilized Pseudomonas putida bioreactor system (2007)